PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600318.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 318aa    MW: 34897.5 Da    PI: 9.7708
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31232289258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      D y+WrKYGqK++kgs++pr+YYrC+s  gCp++k+ver+++dpk+v++tY geH+h
  XP_009600318.1 232 ADDYSWRKYGQKPIKGSPYPRGYYRCSSVrGCPARKHVERATDDPKMVIVTYDGEHRH 289
                     69*************************988***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.4E-15184229IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.5E-32220289IPR003657WRKY domain
PROSITE profilePS5081131.238226292IPR003657WRKY domain
SuperFamilySSF1182904.45E-26229289IPR003657WRKY domain
SMARTSM007743.9E-36231291IPR003657WRKY domain
PfamPF031061.9E-26233289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAIELLGYSQ INEQLALQEA ASAGLNSMDH LIRFVSHQQQ KNQPVQPDCR QLADFTVSNF  60
KKVISILNRT GHARFRRSPV QLSDSCTALS LSTSIPVKET PPQPTPPTPA VELVEHSQFP  120
ALKFDFTKSK VAKDTLSLST NSSSFMSSIT GDCEGSVSNG KQFSSVSLPP RPPVSSGKPP  180
LAGKRCRDHD LSDEMSGRIS GSGNCHCQKR KYRVKKVIRV PAVSSKIADI PADDYSWRKY  240
GQKPIKGSPY PRGYYRCSSV RGCPARKHVE RATDDPKMVI VTYDGEHRHV IQGTSADAGA  300
GSSGERMMAF DSTEQRKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22219289271WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600318.10.0PREDICTED: probable WRKY transcription factor 11
SwissprotQ9SV151e-105WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLA7UGD01e-142A7UGD0_SOLTU; WRKY transcription factor 3
STRINGSolyc08g006320.2.11e-141(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31452250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.22e-86WRKY DNA-binding protein 11